PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 913363
Common NameARALYDRAFT_913363
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 188aa    MW: 20888.7 Da    PI: 5.7386
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
913363genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-192676256
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
            +y+GVr ++ +g+Wv+eIr+p+    + +r++lg+++ +e+Aa+a++aa  +++ge
  913363 26 CYRGVRKRS-WGKWVSEIRVPK----TgRRIWLGSYDAPEKAARAYDAALFCIRGE 76
            8*****888.**********95....35*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-122676IPR001471AP2/ERF domain
PROSITE profilePS5103221.9972683IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-282684IPR001471AP2/ERF domain
SMARTSM003803.8E-362689IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-202684IPR016177DNA-binding domain
PRINTSPR003672.2E-92738IPR001471AP2/ERF domain
CDDcd000183.33E-332785No hitNo description
PRINTSPR003672.2E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MPPSPPKSPF MSSSLKEAHE DSRFKCYRGV RKRSWGKWVS EIRVPKTGRR IWLGSYDAPE  60
KAARAYDAAL FCIRGEKGVY NFPTDKKPQL PEGSVRPLSK LDIQTIATNY ASSVVHVPPH  120
ATTLPVTAQV PSEVPTSPDV SASTEITEIV DEYYLPTDAS AESIFSVEDL QLDNFLMMDI  180
DWINNLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-152583160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-152583463ATERF1
3gcc_A2e-152583463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00463DAPTransfer from AT4G31060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0221980.0AL022198.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F6I18 (ESSA project).
GenBankAL1615780.0AL161578.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 74.
GenBankBT0117740.0BT011774.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankBT0123990.0BT012399.1 Arabidopsis thaliana At4g31060 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869347.11e-137hypothetical protein ARALYDRAFT_913363
SwissprotQ6NLD51e-130ERF15_ARATH; Ethylene-responsive transcription factor ERF015
TrEMBLD7MBJ31e-137D7MBJ3_ARALL; Putative uncharacterized protein
STRINGscaffold_701105.11e-137(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM148991620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.11e-121ERF family protein